J5_9PJ8_001

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CGAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ8|1|A|C|40
9PJ8|1|A|U|41
9PJ8|1|A|G|42
9PJ8|1|A|G|43
*
9PJ8|1|A|C|405
9PJ8|1|A|G|406
9PJ8|1|A|U|407
9PJ8|1|A|G|408
*
9PJ8|1|A|C|438
9PJ8|1|A|U|439
9PJ8|1|A|U|440
9PJ8|1|A|U|441
9PJ8|1|A|C|442
*
9PJ8|1|A|G|479
9PJ8|1|A|A|480
9PJ8|1|A|A|481
9PJ8|1|A|G|482
*
9PJ8|1|A|C|527
9PJ8|1|A|G|528
9PJ8|1|A|A|529
9PJ8|1|A|G|530

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12