J5_9PJ8_004

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*UGG*UGGC*GUG

Length

24 nucleotides

Bulged bases

9PJ8|1|a|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ8|1|a|C|46
9PJ8|1|a|G|47
9PJ8|1|a|A|48
9PJ8|1|a|U|49
9PJ8|1|a|G|50
9PJ8|1|a|A|51
9PJ8|1|a|A|52
9PJ8|1|a|G|53
*
9PJ8|1|a|C|115
9PJ8|1|a|G|116
9PJ8|1|a|A|117
9PJ8|1|a|A|118
9PJ8|1|a|U|119
9PJ8|1|a|G|120
*
9PJ8|1|a|U|129
9PJ8|1|a|G|130
9PJ8|1|a|G|131
*
9PJ8|1|a|U|153
9PJ8|1|a|G|154
9PJ8|1|a|G|155
9PJ8|1|a|C|156
*
9PJ8|1|a|G|183
9PJ8|1|a|U|184
9PJ8|1|a|G|185

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23