J5_9PJ8_009
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9PJ8|1|a|A|2245, 9PJ8|1|a|A|2630, 9PJ8|1|a|U|2688, 9PJ8|1|a|U|2791
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PJ8|1|a|G|2240
9PJ8|1|a|A|2241
9PJ8|1|a|A|2242
9PJ8|1|a|A|2243
9PJ8|1|a|G|2244||A
9PJ8|1|a|A|2245
9PJ8|1|a|C|2246
9PJ8|1|a|C|2247
*
9PJ8|1|a|G|2628
9PJ8|1|a|G|2629
9PJ8|1|a|A|2630
9PJ8|1|a|H2U|2631
9PJ8|1|a|A|2632
9PJ8|1|a|A|2633
9PJ8|1|a|C|2634
9PJ8|1|a|A|2635
*
9PJ8|1|a|U|2682
9PJ8|1|a|C|2683
9PJ8|1|a|G|2684
9PJ8|1|a|2MA|2685
9PJ8|1|a|PSU|2686
9PJ8|1|a|G|2687
9PJ8|1|a|U|2688
9PJ8|1|a|C|2689
*
9PJ8|1|a|G|2764
9PJ8|1|a|G|2765
9PJ8|1|a|U|2766
9PJ8|1|a|U|2767
9PJ8|1|a|C|2768
9PJ8|1|a|A|2769
9PJ8|1|a|G|2770
*
9PJ8|1|a|C|2788
9PJ8|1|a|G|2789
9PJ8|1|a|G|2790
9PJ8|1|a|U|2791
9PJ8|1|a|C|2792
9PJ8|1|a|C|2793
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
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