J5_9PJ9_007
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9PJ9|1|a|U|1332
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PJ9_007 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1053
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PJ9|1|a|C|667
9PJ9|1|a|G|668
9PJ9|1|a|A|669
9PJ9|1|a|G|670
9PJ9|1|a|U|671
9PJ9|1|a|U|672
*
9PJ9|1|a|A|753
9PJ9|1|a|G|754
9PJ9|1|a|A|755
9PJ9|1|a|C|756
*
9PJ9|1|a|G|894
9PJ9|1|a|U|895
9PJ9|1|a|U|896
9PJ9|1|a|C|897
*
9PJ9|1|a|G|1272
9PJ9|1|a|C|1273
*
9PJ9|1|a|G|1327
9PJ9|1|a|A|1328
9PJ9|1|a|G|1329
9PJ9|1|a|A|1330
9PJ9|1|a|A|1331
9PJ9|1|a|U|1332
9PJ9|1|a|G|1333
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain p
- 50S ribosomal protein L20
- Chain q
- Large ribosomal subunit protein bL21
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