J5_9PKD_003
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9PKD|1|L5|G|3620, 9PKD|1|L5|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|G|2855
9PKD|1|L5|C|2856
9PKD|1|L5|A|2857
9PKD|1|L5|A|2858
9PKD|1|L5|G|2859
9PKD|1|L5|C|2860
9PKD|1|L5|OMC|2861
9PKD|1|L5|G|2862
9PKD|1|L5|G|2863
*
9PKD|1|L5|U|2887
9PKD|1|L5|G|2888
*
9PKD|1|L5|U|3613
9PKD|1|L5|G|3614
*
9PKD|1|L5|C|3618
9PKD|1|L5|G|3619
9PKD|1|L5|G|3620
9PKD|1|L5|A|3621
9PKD|1|L5|C|3622
9PKD|1|L5|C|3623
9PKD|1|L5|A|3624
9PKD|1|L5|G|3625
9PKD|1|L5|G|3626
*
9PKD|1|L5|C|3835
9PKD|1|L5|A|3836
9PKD|1|L5|C|3837
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- Ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: