J5_9PN5_001
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9PN5|1|A4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.3
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9PN5|1|A1|A|20
9PN5|1|A1|G|21
9PN5|1|A1|G|22
*
9PN5|1|A4|C|35
9PN5|1|A4|G|36
9PN5|1|A4|A|37
9PN5|1|A4|U|38
9PN5|1|A4|G|39
9PN5|1|A4|A|40
9PN5|1|A4|A|41
9PN5|1|A4|G|42
*
9PN5|1|A4|U|102
9PN5|1|A4|G|103
9PN5|1|A4|A|104
9PN5|1|A4|A|105
9PN5|1|A4|C|106
9PN5|1|A4|G|107
*
9PN5|1|A4|C|115
9PN5|1|A4|G|116
*
9PN5|1|A4|C|137
9PN5|1|A4|A|138
9PN5|1|A4|U|139
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AN
- Large ribosomal subunit protein eL15A
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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