J5_9PN5_004
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9PN5|1|A1|G|2116, 9PN5|1|A1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PN5|1|A1|G|1906
9PN5|1|A1|C|1907
9PN5|1|A1|A|1908
9PN5|1|A1|A|1909
9PN5|1|A1|A|1910
9PN5|1|A1|A|1911
9PN5|1|A1|U|1912
9PN5|1|A1|A|1913
9PN5|1|A1|G|1914
*
9PN5|1|A1|U|1938
9PN5|1|A1|G|1939
*
9PN5|1|A1|U|2109
9PN5|1|A1|G|2110
*
9PN5|1|A1|C|2114
9PN5|1|A1|G|2115
9PN5|1|A1|G|2116
9PN5|1|A1|A|2117
9PN5|1|A1|C|2118
9PN5|1|A1|A|2119
9PN5|1|A1|A|2120
9PN5|1|A1|G|2121
9PN5|1|A1|G|2122
*
9PN5|1|A1|C|2331
9PN5|1|A1|A|2332
9PN5|1|A1|C|2333
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- Large ribosomal subunit protein uL3
- Chain AR
- 60S ribosomal protein L19-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- Large ribosomal subunit protein eL24A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
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