J5_9PN5_005
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9PN5|1|A1|A|2404, 9PN5|1|A1|A|2817, 9PN5|1|A1|G|2874, 9PN5|1|A1|U|2875, 9PN5|1|A1|U|2954, 9PN5|1|A1|U|2978, 9PN5|1|A1|U|2979
- QA status
- Modified nucleotides: 5MC, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_83685.2
- Basepair signature
- cWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-tHH-F-F-cWW-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PN5|1|A1|A|2399
9PN5|1|A1|G|2400
9PN5|1|A1|A|2401
9PN5|1|A1|A|2402
9PN5|1|A1|G|2403
9PN5|1|A1|A|2404
9PN5|1|A1|C|2405
9PN5|1|A1|C|2406
*
9PN5|1|A1|G|2815
9PN5|1|A1|G|2816
9PN5|1|A1|A|2817
9PN5|1|A1|U|2818
9PN5|1|A1|A|2819
9PN5|1|A1|A|2820
9PN5|1|A1|C|2821
9PN5|1|A1|U|2822
9PN5|1|A1|G|2823
*
9PN5|1|A1|C|2867
9PN5|1|A1|U|2868
9PN5|1|A1|U|2869
9PN5|1|A1|5MC|2870
9PN5|1|A1|G|2871
9PN5|1|A1|A|2872
9PN5|1|A1|U|2873
9PN5|1|A1|G|2874
9PN5|1|A1|U|2875
9PN5|1|A1|C|2876
*
9PN5|1|A1|G|2951
9PN5|1|A1|G|2952
9PN5|1|A1|U|2953
9PN5|1|A1|U|2954
9PN5|1|A1|U|2955
9PN5|1|A1|A|2956
9PN5|1|A1|G|2957
*
9PN5|1|A1|PSU|2975
9PN5|1|A1|A|2976
9PN5|1|A1|G|2977
9PN5|1|A1|U|2978
9PN5|1|A1|U|2979
9PN5|1|A1|U|2980
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AB
- Large ribosomal subunit protein uL3
- Chain AC
- 60S ribosomal protein L4-A
- Chain AI
- Large ribosomal subunit protein uL16
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- Large ribosomal subunit protein eL29
Coloring options: