J5_9PN5_006
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9PN5|1|A1|G|2418, 9PN5|1|A1|A|2799, 9PN5|1|A1|G|2800, 9PN5|1|A1|A|2801, 9PN5|1|A1|A|2802
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.3
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9PN5|1|A1|PSU|2416
9PN5|1|A1|U|2417
9PN5|1|A1|G|2418
9PN5|1|A1|A|2419
*
9PN5|1|A1|U|2611
9PN5|1|A1|U|2612
9PN5|1|A1|U|2613
9PN5|1|A1|G|2614
*
9PN5|1|A1|C|2627
9PN5|1|A1|A|2628
*
9PN5|1|A1|U|2650
9PN5|1|A1|G|2651
*
9PN5|1|A1|C|2798
9PN5|1|A1|A|2799
9PN5|1|A1|G|2800
9PN5|1|A1|A|2801
9PN5|1|A1|A|2802
9PN5|1|A1|A|2803
9PN5|1|A1|A|2804
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- Large ribosomal subunit protein eL15A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- Large ribosomal subunit protein eL29
- Chain Ao
- Large ribosomal subunit protein eL42A
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