J5_9PN5_009
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9PN5|1|B5|A|93, 9PN5|1|B5|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.3
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9PN5|1|B5|C|54
9PN5|1|B5|A|55
9PN5|1|B5|U|56
9PN5|1|B5|G|57
*
9PN5|1|B5|C|90
9PN5|1|B5|G|91
9PN5|1|B5|A|92
9PN5|1|B5|A|93
9PN5|1|B5|U|94
9PN5|1|B5|G|95
9PN5|1|B5|G|96
9PN5|1|B5|C|97
*
9PN5|1|B5|G|386
9PN5|1|B5|A|387
9PN5|1|B5|G|388
*
9PN5|1|B5|C|409
9PN5|1|B5|A|410
9PN5|1|B5|C|411
*
9PN5|1|B5|G|422
9PN5|1|B5|G|423
9PN5|1|B5|C|424
9PN5|1|B5|A|425
9PN5|1|B5|G|426
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L23-A
- Chain BE
- Small ribosomal subunit protein eS4A
- Chain BG
- Small ribosomal subunit protein eS6A
- Chain BI
- Small ribosomal subunit protein eS8A
- Chain BJ
- Small ribosomal subunit protein uS4A
- Chain BY
- Small ribosomal subunit protein eS24A
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