Loop J5_9PN5

3D structure

PDB id: 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Composite map of hypomethylated 80S ribosome treated with hygromycin B
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.75 Å

Loop

Sequence: GAUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUUC
Length: 46 nucleotides
Bulged bases: 9PN5|1|B5|U|128, 9PN5|1|B5|U|134, 9PN5|1|B5|A|135, 9PN5|1|B5|C|136, 9PN5|1|B5|U|137, 9PN5|1|B5|A|140, 9PN5|1|B5|U|141, 9PN5|1|B5|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9PN5|1|B5|G|123
9PN5|1|B5|A|124
9PN5|1|B5|U|125
9PN5|1|B5|A|126
9PN5|1|B5|G|127
9PN5|1|B5|U|128
9PN5|1|B5|U|129
9PN5|1|B5|C|130
9PN5|1|B5|C|131
9PN5|1|B5|U|132
9PN5|1|B5|U|133
9PN5|1|B5|U|134
9PN5|1|B5|A|135
9PN5|1|B5|C|136
9PN5|1|B5|U|137
9PN5|1|B5|A|138
9PN5|1|B5|C|139
9PN5|1|B5|A|140
9PN5|1|B5|U|141
9PN5|1|B5|G|142
9PN5|1|B5|G|143
*
9PN5|1|B5|C|172
9PN5|1|B5|A|173
9PN5|1|B5|U|174
9PN5|1|B5|G|175
9PN5|1|B5|C|176
9PN5|1|B5|U|177
9PN5|1|B5|U|178
9PN5|1|B5|A|179
9PN5|1|B5|A|180
9PN5|1|B5|A|181
9PN5|1|B5|A|182
*
9PN5|1|B5|U|203
9PN5|1|B5|G|204
*
9PN5|1|B5|C|263
9PN5|1|B5|G|264
9PN5|1|B5|A|265
9PN5|1|B5|A|266
9PN5|1|B5|U|267
*
9PN5|1|B5|A|288
9PN5|1|B5|U|289
9PN5|1|B5|G|290
9PN5|1|B5|G|291
9PN5|1|B5|U|292
9PN5|1|B5|U|293
9PN5|1|B5|C|294

Current chains

Chain B5: 18S rRNA

Nearby chains

Chain BE: Small ribosomal subunit protein eS4A
Chain BG: Small ribosomal subunit protein eS6A
Chain BI: Small ribosomal subunit protein eS8A

J5_9PN5_011