J5_9PN5_012
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- AACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAUU
- Length
- 41 nucleotides
- Bulged bases
- 9PN5|1|B5|U|639, 9PN5|1|B5|U|694, 9PN5|1|B5|C|696, 9PN5|1|B5|C|697, 9PN5|1|B5|U|698, 9PN5|1|B5|U|699, 9PN5|1|B5|G|739, 9PN5|1|B5|A|740, 9PN5|1|B5|C|741, 9PN5|1|B5|U|742, 9PN5|1|B5|U|813, 9PN5|1|B5|G|815, 9PN5|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PN5|1|B5|A|635
9PN5|1|B5|A|636
9PN5|1|B5|C|637
9PN5|1|B5|U|638
9PN5|1|B5|U|639
9PN5|1|B5|U|640
9PN5|1|B5|G|641
*
9PN5|1|B5|U|693
9PN5|1|B5|U|694
9PN5|1|B5|U|695
9PN5|1|B5|C|696
9PN5|1|B5|C|697
9PN5|1|B5|U|698
9PN5|1|B5|U|699
9PN5|1|B5|C|700
*
9PN5|1|B5|G|738
9PN5|1|B5|G|739
9PN5|1|B5|A|740
9PN5|1|B5|C|741
9PN5|1|B5|U|742
9PN5|1|B5|U|743
9PN5|1|B5|U|744
*
9PN5|1|B5|A|807
9PN5|1|B5|U|808
9PN5|1|B5|A|809
9PN5|1|B5|G|810
9PN5|1|B5|A|811
9PN5|1|B5|A|812
9PN5|1|B5|U|813
9PN5|1|B5|A|814
9PN5|1|B5|G|815
9PN5|1|B5|G|816
9PN5|1|B5|A|817
*
9PN5|1|B5|U|854
9PN5|1|B5|A|855
9PN5|1|B5|A|856
9PN5|1|B5|U|857
9PN5|1|B5|G|858
9PN5|1|B5|A|859
9PN5|1|B5|U|860
9PN5|1|B5|U|861
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- Small ribosomal subunit protein eS4A
- Chain BH
- Small ribosomal subunit protein eS7A
- Chain BL
- Small ribosomal subunit protein uS17A
- Chain BN
- Small ribosomal subunit protein uS15
- Chain BW
- Small ribosomal subunit protein uS8A
Coloring options: