Loop J5_9PSI

3D structure

PDB id: 9PSI (explore in PDB, NAKB, or RNA 3D Hub)
Description: In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.12 Å

Loop

Sequence: CUAGAAAUAAC*GACCC*GUUG*CCAAU*AAGAACUAAUG
Length: 36 nucleotides
Bulged bases: 9PSI|1|A|A|1869, 9PSI|1|A|G|2292, 9PSI|1|A|U|2299
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9PSI|1|A|C|1865
9PSI|1|A|U|1866
9PSI|1|A|A|1867
9PSI|1|A|G|1868
9PSI|1|A|A|1869
9PSI|1|A|A|1870
9PSI|1|A|A|1871
9PSI|1|A|U|1872
9PSI|1|A|A|1873
9PSI|1|A|A|1874
9PSI|1|A|C|1875
*
9PSI|1|A|G|1899
9PSI|1|A|A|1900
9PSI|1|A|C|1901
9PSI|1|A|C|1902
9PSI|1|A|C|1903
*
9PSI|1|A|G|2019
9PSI|1|A|U|2020
9PSI|1|A|U|2021
9PSI|1|A|G|2022
*
9PSI|1|A|C|2271
9PSI|1|A|C|2272
9PSI|1|A|A|2273
9PSI|1|A|A|2274
9PSI|1|A|U|2275
*
9PSI|1|A|A|2290
9PSI|1|A|A|2291
9PSI|1|A|G|2292
9PSI|1|A|A|2293
9PSI|1|A|A|2294
9PSI|1|A|C|2295
9PSI|1|A|U|2296
9PSI|1|A|A|2297
9PSI|1|A|A|2298
9PSI|1|A|U|2299
9PSI|1|A|G|2300

Current chains

Chain A: 16S mitochondrial rRNA

Nearby chains

Chain 3: 39S ribosomal protein L35, mitochondrial
Chain F: 39S ribosomal protein L4, mitochondrial
Chain M: 39S ribosomal protein L15, mitochondrial
Chain R: 39S ribosomal protein L20, mitochondrial
Chain S: 39S ribosomal protein L21, mitochondrial
Chain b: 39S ribosomal protein L43, mitochondrial
Chain c: 39S ribosomal protein L44, mitochondrial
Chain g: 39S ribosomal protein L49, mitochondrial
Chain i: 39S ribosomal protein L51, mitochondrial

J5_9PSI_002