J5_9Q1Q_004
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|4394, 9Q1Q|1|5|G|4451, 9Q1Q|1|5|U|4555, 9Q1Q|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|A|3903
9Q1Q|1|5|G|3904
9Q1Q|1|5|A|3905
9Q1Q|1|5|A|3906
9Q1Q|1|5|G|3907
9Q1Q|1|5|A|3908
9Q1Q|1|5|C|3909
9Q1Q|1|5|C|3910
*
9Q1Q|1|5|G|4392
9Q1Q|1|5|G|4393
9Q1Q|1|5|A|4394
9Q1Q|1|5|U|4395
9Q1Q|1|5|A|4396
9Q1Q|1|5|A|4397
9Q1Q|1|5|C|4398
9Q1Q|1|5|U|4399
9Q1Q|1|5|G|4400
*
9Q1Q|1|5|C|4444
9Q1Q|1|5|U|4445
9Q1Q|1|5|U|4446
9Q1Q|1|5|C|4447
9Q1Q|1|5|G|4448
9Q1Q|1|5|A|4449
9Q1Q|1|5|U|4450
9Q1Q|1|5|G|4451
9Q1Q|1|5|U|4452
9Q1Q|1|5|C|4453
*
9Q1Q|1|5|G|4528
9Q1Q|1|5|G|4529
9Q1Q|1|5|U|4530
9Q1Q|1|5|U|4531
9Q1Q|1|5|U|4532
9Q1Q|1|5|A|4533
9Q1Q|1|5|G|4534
*
9Q1Q|1|5|U|4552
9Q1Q|1|5|A|4553
9Q1Q|1|5|G|4554
9Q1Q|1|5|U|4555
9Q1Q|1|5|U|4556
9Q1Q|1|5|U|4557
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain I
- Ribosomal protein L10
- Chain b
- eL29
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