J5_9Q1Q_007
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|9|C|30
9Q1Q|1|9|U|31
9Q1Q|1|9|U|32
9Q1Q|1|9|G|33
9Q1Q|1|9|U|34
*
9Q1Q|1|9|A|521
9Q1Q|1|9|A|522
9Q1Q|1|9|A|523
9Q1Q|1|9|U|524
9Q1Q|1|9|A|525
9Q1Q|1|9|A|526
9Q1Q|1|9|C|527
*
9Q1Q|1|9|G|558
9Q1Q|1|9|G|559
9Q1Q|1|9|A|560
9Q1Q|1|9|A|561
9Q1Q|1|9|U|562
9Q1Q|1|9|G|563
9Q1Q|1|9|A|564
9Q1Q|1|9|G|565
*
9Q1Q|1|9|C|585
9Q1Q|1|9|G|586
9Q1Q|1|9|A|587
9Q1Q|1|9|G|588
9Q1Q|1|9|G|589
9Q1Q|1|9|A|590
9Q1Q|1|9|U|591
9Q1Q|1|9|C|592
9Q1Q|1|9|C|593
9Q1Q|1|9|A|594
9Q1Q|1|9|U|595
*
9Q1Q|1|9|A|641
9Q1Q|1|9|U|642
9Q1Q|1|9|A|643
9Q1Q|1|9|G|644
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain JJ
- 40S ribosomal protein S9
- Chain XX
- 40S ribosomal protein S23
- Chain YY
- 40S ribosomal protein S24
- Chain ee
- Small ribosomal subunit protein eS30
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