J5_9Q1Q_009

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9Q1Q|1|9|G|126, 9Q1Q|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|G|123
9Q1Q|1|9|U|124
9Q1Q|1|9|C|125
9Q1Q|1|9|G|126
9Q1Q|1|9|C|127
9Q1Q|1|9|U|128
9Q1Q|1|9|C|129
*
9Q1Q|1|9|G|183
9Q1Q|1|9|G|184
9Q1Q|1|9|G|185
*
9Q1Q|1|9|U|214
9Q1Q|1|9|G|215
*
9Q1Q|1|9|C|310
9Q1Q|1|9|C|311
9Q1Q|1|9|G|312
*
9Q1Q|1|9|C|337
9Q1Q|1|9|G|338
9Q1Q|1|9|A|339
9Q1Q|1|9|C|340
9Q1Q|1|9|C|341

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8