J5_9Q1Q_010
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 9Q1Q|1|9|C|687, 9Q1Q|1|9|U|688, 9Q1Q|1|9|U|871, 9Q1Q|1|9|G|873, 9Q1Q|1|9|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|9|A|685
9Q1Q|1|9|U|686
9Q1Q|1|9|C|687
9Q1Q|1|9|U|688
9Q1Q|1|9|U|689
9Q1Q|1|9|G|690
*
9Q1Q|1|9|C|736
9Q1Q|1|9|U|743
9Q1Q|1|9|G|744
*
9Q1Q|1|9|C|797
9Q1Q|1|9|G|798
9Q1Q|1|9|U|799
9Q1Q|1|9|U|800
*
9Q1Q|1|9|A|865
9Q1Q|1|9|U|866
9Q1Q|1|9|G|867
9Q1Q|1|9|G|868
9Q1Q|1|9|A|869
9Q1Q|1|9|A|870
9Q1Q|1|9|U|871
9Q1Q|1|9|A|872
9Q1Q|1|9|G|873
9Q1Q|1|9|G|874
*
9Q1Q|1|9|C|912
9Q1Q|1|9|A|913
9Q1Q|1|9|U|914
9Q1Q|1|9|G|915
9Q1Q|1|9|A|916
9Q1Q|1|9|U|917
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain HH
- Small ribosomal subunit protein eS7
- Chain LL
- Small ribosomal subunit protein uS17
- Chain NN
- 40S ribosomal protein S13
- Chain R
- 60S ribosomal protein L19
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
Coloring options: