J5_9Q1S_002
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 9Q1S|1|5|C|2289, 9Q1S|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|G|1335
9Q1S|1|5|G|1336
9Q1S|1|5|A|1337
9Q1S|1|5|G|1338
9Q1S|1|5|U|1339
9Q1S|1|5|C|1340
*
9Q1S|1|5|G|1516
9Q1S|1|5|G|1517
9Q1S|1|5|A|1518
9Q1S|1|5|C|1519
*
9Q1S|1|5|G|1658
9Q1S|1|5|U|1659
9Q1S|1|5|U|1660
9Q1S|1|5|C|1661
*
9Q1S|1|5|G|2288
9Q1S|1|5|C|2289
9Q1S|1|5|C|2290
*
9Q1S|1|5|G|2345
9Q1S|1|5|C|2346
9Q1S|1|5|A|2347
9Q1S|1|5|G|2348
9Q1S|1|5|A|2349
9Q1S|1|5|U|2350
9Q1S|1|5|C|2351
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Large ribosomal subunit protein eL32
- Chain r
- 60S ribosomal protein L28
Coloring options: