J5_9Q2M_004

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

9Q2M|1|5|A|4394, 9Q2M|1|5|G|4451, 9Q2M|1|5|U|4555, 9Q2M|1|5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|5|A|3903
9Q2M|1|5|G|3904
9Q2M|1|5|A|3905
9Q2M|1|5|A|3906
9Q2M|1|5|G|3907
9Q2M|1|5|A|3908
9Q2M|1|5|C|3909
9Q2M|1|5|C|3910
*
9Q2M|1|5|G|4392
9Q2M|1|5|G|4393
9Q2M|1|5|A|4394
9Q2M|1|5|U|4395
9Q2M|1|5|A|4396
9Q2M|1|5|A|4397
9Q2M|1|5|C|4398
9Q2M|1|5|U|4399
9Q2M|1|5|G|4400
*
9Q2M|1|5|C|4444
9Q2M|1|5|U|4445
9Q2M|1|5|U|4446
9Q2M|1|5|C|4447
9Q2M|1|5|G|4448
9Q2M|1|5|A|4449
9Q2M|1|5|U|4450
9Q2M|1|5|G|4451
9Q2M|1|5|U|4452
9Q2M|1|5|C|4453
*
9Q2M|1|5|G|4528
9Q2M|1|5|G|4529
9Q2M|1|5|U|4530
9Q2M|1|5|U|4531
9Q2M|1|5|U|4532
9Q2M|1|5|A|4533
9Q2M|1|5|G|4534
*
9Q2M|1|5|U|4552
9Q2M|1|5|A|4553
9Q2M|1|5|G|4554
9Q2M|1|5|U|4555
9Q2M|1|5|U|4556
9Q2M|1|5|U|4557

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain B

60S ribosomal protein L3

Chain C

60S ribosomal protein L4

Chain a

60S ribosomal protein L27a

Chain b

eL29