J5_9Q2M_009

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9Q2M|1|9|G|126, 9Q2M|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|G|123
9Q2M|1|9|U|124
9Q2M|1|9|C|125
9Q2M|1|9|G|126
9Q2M|1|9|C|127
9Q2M|1|9|U|128
9Q2M|1|9|C|129
*
9Q2M|1|9|G|173
9Q2M|1|9|G|174
9Q2M|1|9|G|175
*
9Q2M|1|9|U|204
9Q2M|1|9|G|205
*
9Q2M|1|9|C|239
9Q2M|1|9|C|240
9Q2M|1|9|G|241
*
9Q2M|1|9|C|261
9Q2M|1|9|G|262
9Q2M|1|9|A|263
9Q2M|1|9|C|264
9Q2M|1|9|C|265

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8