J5_9Q2M_010
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 9Q2M|1|9|C|611, 9Q2M|1|9|U|718, 9Q2M|1|9|G|720, 9Q2M|1|9|A|760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2M|1|9|A|609
9Q2M|1|9|U|610
9Q2M|1|9|C|611
9Q2M|1|9|U|612
9Q2M|1|9|U|613
9Q2M|1|9|G|614
*
9Q2M|1|9|C|629
9Q2M|1|9|U|630
9Q2M|1|9|G|631
*
9Q2M|1|9|C|650
9Q2M|1|9|G|651
9Q2M|1|9|U|652
9Q2M|1|9|U|653
*
9Q2M|1|9|A|712
9Q2M|1|9|U|713
9Q2M|1|9|G|714
9Q2M|1|9|G|715
9Q2M|1|9|A|716
9Q2M|1|9|A|717
9Q2M|1|9|U|718
9Q2M|1|9|A|719
9Q2M|1|9|G|720
9Q2M|1|9|G|721
*
9Q2M|1|9|C|759
9Q2M|1|9|A|760
9Q2M|1|9|U|761
9Q2M|1|9|G|762
9Q2M|1|9|A|763
9Q2M|1|9|U|764
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain HH
- Small ribosomal subunit protein eS7
- Chain LL
- Small ribosomal subunit protein uS17
- Chain NN
- 40S ribosomal protein S13
- Chain R
- 60S ribosomal protein L19
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
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