Loop J5_9Q2O

3D structure

PDB id: 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
Description: NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Loop

Sequence: CC*GAGGGAG*UGCGCCGCGCUCUCC*GCCGGG*CCACGCGUCCCCCGCGAGCGCACGGGG
Length: 57 nucleotides
Bulged bases: 9Q2O|1|5|G|959, 9Q2O|1|5|C|972, 9Q2O|1|5|C|1237, 9Q2O|1|5|G|1271, 9Q2O|1|5|C|1272, 9Q2O|1|5|C|1280
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q2O|1|5|C|712
9Q2O|1|5|C|713
*
9Q2O|1|5|G|955
9Q2O|1|5|A|956
9Q2O|1|5|G|957
9Q2O|1|5|G|958
9Q2O|1|5|G|959
9Q2O|1|5|A|960
9Q2O|1|5|G|961
*
9Q2O|1|5|U|971
9Q2O|1|5|G|971|||A
9Q2O|1|5|C|972
9Q2O|1|5|G|973
9Q2O|1|5|C|974
9Q2O|1|5|C|975
9Q2O|1|5|G|976
9Q2O|1|5|C|977
9Q2O|1|5|G|978
9Q2O|1|5|C|979
9Q2O|1|5|U|980
9Q2O|1|5|C|981
9Q2O|1|5|U|982
9Q2O|1|5|C|983
9Q2O|1|5|C|984
*
9Q2O|1|5|G|1070
9Q2O|1|5|C|1071
9Q2O|1|5|C|1072
9Q2O|1|5|G|1073
9Q2O|1|5|G|1074
9Q2O|1|5|G|1075
*
9Q2O|1|5|C|1236
9Q2O|1|5|C|1237
9Q2O|1|5|A|1238
9Q2O|1|5|C|1239
9Q2O|1|5|G|1244
9Q2O|1|5|C|1245
9Q2O|1|5|G|1246
9Q2O|1|5|U|1247
9Q2O|1|5|C|1248
9Q2O|1|5|C|1249
9Q2O|1|5|C|1250
9Q2O|1|5|C|1251
9Q2O|1|5|C|1252
9Q2O|1|5|G|1271
9Q2O|1|5|C|1272
9Q2O|1|5|G|1273
9Q2O|1|5|A|1274
9Q2O|1|5|G|1275
9Q2O|1|5|C|1276
9Q2O|1|5|G|1277
9Q2O|1|5|C|1278
9Q2O|1|5|A|1279
9Q2O|1|5|C|1280
9Q2O|1|5|G|1281
9Q2O|1|5|G|1282
9Q2O|1|5|G|1283
9Q2O|1|5|G|1284

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain C: 60S ribosomal protein L4
Chain E: 60S ribosomal protein L6
Chain F: 60S ribosomal protein L7
Chain b: eL29
Chain e: Large ribosomal subunit protein eL32

J5_9Q2O_002