J5_9Q2T_001
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UG*CGAUGAAG*CGAACG*CG*UA
- Length
- 20 nucleotides
- Bulged bases
- 9Q2T|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2T|1|5|U|20
9Q2T|1|5|G|21
*
9Q2T|1|8|C|35
9Q2T|1|8|G|36
9Q2T|1|8|A|37
9Q2T|1|8|U|38
9Q2T|1|8|G|39
9Q2T|1|8|A|40
9Q2T|1|8|A|41
9Q2T|1|8|G|42
*
9Q2T|1|8|C|101
9Q2T|1|8|G|102
9Q2T|1|8|A|103
9Q2T|1|8|A|104
9Q2T|1|8|C|105
9Q2T|1|8|G|106
*
9Q2T|1|8|C|113
9Q2T|1|8|G|114
*
9Q2T|1|8|U|136
9Q2T|1|8|A|137
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15
- Chain X
- Large ribosomal subunit protein uL23
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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