J5_9Q2T_005
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9Q2T|1|5|G|3922, 9Q2T|1|5|A|4376, 9Q2T|1|5|G|4377, 9Q2T|1|5|A|4378, 9Q2T|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q2T_005 not in the Motif Atlas
- Homologous match to J5_9H3G_006
- Geometric discrepancy: 0.088
- The information below is about J5_9H3G_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.4
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q2T|1|5|U|3920
9Q2T|1|5|U|3921
9Q2T|1|5|G|3922
9Q2T|1|5|A|3923
*
9Q2T|1|5|U|4188
9Q2T|1|5|U|4189
9Q2T|1|5|U|4190
9Q2T|1|5|G|4191
*
9Q2T|1|5|C|4204
9Q2T|1|5|A|4205
*
9Q2T|1|5|U|4227
9Q2T|1|5|G|4228
*
9Q2T|1|5|C|4375
9Q2T|1|5|A|4376
9Q2T|1|5|G|4377
9Q2T|1|5|A|4378
9Q2T|1|5|A|4379
9Q2T|1|5|A|4380
9Q2T|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain N
- 60S ribosomal protein L15
- Chain Q
- Large ribosomal subunit protein eL18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- Large ribosomal subunit protein eL29
- Chain o
- eL42
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