J5_9Q3Q_004
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9Q3Q|1|A|U|1758, 9Q3Q|1|A|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q3Q_004 not in the Motif Atlas
- Homologous match to J5_8B0X_007
- Geometric discrepancy: 0.0304
- The information below is about J5_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9Q3Q|1|A|G|1674
9Q3Q|1|A|C|1675
9Q3Q|1|A|A|1676
9Q3Q|1|A|A|1677
9Q3Q|1|A|A|1678
9Q3Q|1|A|A|1679
9Q3Q|1|A|U|1680
9Q3Q|1|A|G|1681
9Q3Q|1|A|G|1682
*
9Q3Q|1|A|C|1706
9Q3Q|1|A|G|1707
*
9Q3Q|1|A|U|1751
9Q3Q|1|A|C|1752
*
9Q3Q|1|A|G|1756
9Q3Q|1|A|A|1757
9Q3Q|1|A|U|1758
9Q3Q|1|A|A|1759
9Q3Q|1|A|C|1760
9Q3Q|1|A|C|1761
9Q3Q|1|A|A|1762
9Q3Q|1|A|G|1763
9Q3Q|1|A|C|1764
*
9Q3Q|1|A|G|1988
9Q3Q|1|A|G|1989
9Q3Q|1|A|C|1990
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain M
- Large ribosomal subunit protein uL14
- Chain R
- Large ribosomal subunit protein bL19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: