J5_9Q3Q_008
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q3Q_008 not in the Motif Atlas
- Homologous match to J5_8B0X_002
- Geometric discrepancy: 0.0484
- The information below is about J5_8B0X_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q3Q|1|a|C|36
9Q3Q|1|a|U|37
9Q3Q|1|a|G|38
9Q3Q|1|a|G|39
*
9Q3Q|1|a|C|403
9Q3Q|1|a|G|404
9Q3Q|1|a|U|405
9Q3Q|1|a|G|406
*
9Q3Q|1|a|C|436
9Q3Q|1|a|U|437
9Q3Q|1|a|U|438
9Q3Q|1|a|U|439
9Q3Q|1|a|C|440
9Q3Q|1|a|A|441
9Q3Q|1|a|G|442
*
9Q3Q|1|a|C|492
9Q3Q|1|a|A|493
9Q3Q|1|a|G|494
9Q3Q|1|a|A|495
9Q3Q|1|a|A|496
9Q3Q|1|a|G|497
9Q3Q|1|a|A|498
9Q3Q|1|a|A|499
9Q3Q|1|a|G|500
*
9Q3Q|1|a|C|545
9Q3Q|1|a|A|546
9Q3Q|1|a|A|547
9Q3Q|1|a|G|548
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
- Chain z
- Elongation factor Tu 2
Coloring options: