Loop J5_9Q6Q

3D structure

PDB id: 9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 9Q6Q|1|2A|A|2062, 9Q6Q|1|2A|A|2448, 9Q6Q|1|2A|U|2449, 9Q6Q|1|2A|U|2506, 9Q6Q|1|2A|U|2585, 9Q6Q|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q6Q|1|2A|A|2057
9Q6Q|1|2A|A|2058
9Q6Q|1|2A|A|2059
9Q6Q|1|2A|A|2060
9Q6Q|1|2A|G|2061
9Q6Q|1|2A|A|2062
9Q6Q|1|2A|C|2063
9Q6Q|1|2A|C|2064
*
9Q6Q|1|2A|G|2446
9Q6Q|1|2A|G|2447
9Q6Q|1|2A|A|2448
9Q6Q|1|2A|U|2449
9Q6Q|1|2A|A|2450
9Q6Q|1|2A|A|2451
9Q6Q|1|2A|C|2452
9Q6Q|1|2A|A|2453
*
9Q6Q|1|2A|U|2500
9Q6Q|1|2A|C|2501
9Q6Q|1|2A|G|2502
9Q6Q|1|2A|2MA|2503
9Q6Q|1|2A|U|2504
9Q6Q|1|2A|G|2505
9Q6Q|1|2A|U|2506
9Q6Q|1|2A|C|2507
*
9Q6Q|1|2A|G|2582
9Q6Q|1|2A|G|2583
9Q6Q|1|2A|U|2584
9Q6Q|1|2A|U|2585
9Q6Q|1|2A|C|2586
9Q6Q|1|2A|A|2587
9Q6Q|1|2A|G|2588
*
9Q6Q|1|2A|C|2606
9Q6Q|1|2A|G|2607
9Q6Q|1|2A|G|2608
9Q6Q|1|2A|U|2609
9Q6Q|1|2A|C|2610
9Q6Q|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16

J5_9Q6Q_016