J5_9Q6R_002

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9Q6R|1|1A|U|272|||A, 9Q6R|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6R|1|1A|C|268
9Q6R|1|1A|U|269
9Q6R|1|1A|A|270
9Q6R|1|1A|A|271
9Q6R|1|1A|A|271|||A
9Q6R|1|1A|C|271|||B
*
9Q6R|1|1A|G|271|||V
9Q6R|1|1A|G|271|||W
9Q6R|1|1A|G|271|||X
9Q6R|1|1A|U|271|||Y
9Q6R|1|1A|C|271|||Z
9Q6R|1|1A|G|272
9Q6R|1|1A|U|272|||A
9Q6R|1|1A|G|272|||B
*
9Q6R|1|1A|C|366
9Q6R|1|1A|G|370
9Q6R|1|1A|A|371
9Q6R|1|1A|G|372
9Q6R|1|1A|U|373
9Q6R|1|1A|A|374
9Q6R|1|1A|C|375
*
9Q6R|1|1A|G|399
9Q6R|1|1A|G|400
9Q6R|1|1A|A|401
9Q6R|1|1A|A|402
9Q6R|1|1A|U|403
9Q6R|1|1A|C|404
9Q6R|1|1A|U|405
9Q6R|1|1A|G|406
*
9Q6R|1|1A|U|421
9Q6R|1|1A|A|422
9Q6R|1|1A|A|423
9Q6R|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9