J5_9Q6S_011

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9Q6S|1|2A|U|272|||A, 9Q6S|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6S|1|2A|C|268
9Q6S|1|2A|U|269
9Q6S|1|2A|A|270
9Q6S|1|2A|A|271
9Q6S|1|2A|A|271|||A
9Q6S|1|2A|C|271|||B
*
9Q6S|1|2A|G|271|||V
9Q6S|1|2A|G|271|||W
9Q6S|1|2A|G|271|||X
9Q6S|1|2A|U|271|||Y
9Q6S|1|2A|C|271|||Z
9Q6S|1|2A|G|272
9Q6S|1|2A|U|272|||A
9Q6S|1|2A|G|272|||B
*
9Q6S|1|2A|C|366
9Q6S|1|2A|G|370
9Q6S|1|2A|A|371
9Q6S|1|2A|G|372
9Q6S|1|2A|U|373
9Q6S|1|2A|A|374
9Q6S|1|2A|C|375
*
9Q6S|1|2A|G|399
9Q6S|1|2A|G|400
9Q6S|1|2A|A|401
9Q6S|1|2A|A|402
9Q6S|1|2A|U|403
9Q6S|1|2A|C|404
9Q6S|1|2A|U|405
9Q6S|1|2A|G|406
*
9Q6S|1|2A|U|421
9Q6S|1|2A|A|422
9Q6S|1|2A|A|423
9Q6S|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9