J5_9Q6S_014

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

9Q6S|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6S|1|2A|C|601
9Q6S|1|2A|G|602
9Q6S|1|2A|A|603
9Q6S|1|2A|G|604
*
9Q6S|1|2A|C|624
9Q6S|1|2A|G|625
9Q6S|1|2A|U|626
9Q6S|1|2A|A|627
9Q6S|1|2A|G|628
*
9Q6S|1|2A|C|635
9Q6S|1|2A|G|636
9Q6S|1|2A|A|637
9Q6S|1|2A|G|638
*
9Q6S|1|2A|C|650
9Q6S|1|2A|G|651
9Q6S|1|2A|C|652
9Q6S|1|2A|A|652|||A
9Q6S|1|2A|A|652|||B
9Q6S|1|2A|G|652|||C
*
9Q6S|1|2A|C|652|||V
9Q6S|1|2A|A|653
9Q6S|1|2A|A|654
9Q6S|1|2A|A|655
9Q6S|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15