J5_9Q6V_014

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

9Q6V|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q6V|1|2A|C|601
9Q6V|1|2A|G|602
9Q6V|1|2A|A|603
9Q6V|1|2A|G|604
*
9Q6V|1|2A|C|624
9Q6V|1|2A|G|625
9Q6V|1|2A|U|626
9Q6V|1|2A|A|627
9Q6V|1|2A|G|628
*
9Q6V|1|2A|C|635
9Q6V|1|2A|G|636
9Q6V|1|2A|A|637
9Q6V|1|2A|G|638
*
9Q6V|1|2A|C|650
9Q6V|1|2A|G|651
9Q6V|1|2A|C|652
9Q6V|1|2A|A|652|||A
9Q6V|1|2A|A|652|||B
9Q6V|1|2A|G|652|||C
*
9Q6V|1|2A|C|652|||V
9Q6V|1|2A|A|653
9Q6V|1|2A|A|654
9Q6V|1|2A|A|655
9Q6V|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15