Loop J5_9Q7Q

3D structure

PDB id: 9Q7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: ABCE1-eRF1-RNC-AMD1C
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 9Q7Q|1|5|A|3908, 9Q7Q|1|5|A|4394, 9Q7Q|1|5|U|4395, 9Q7Q|1|5|U|4450, 9Q7Q|1|5|G|4451, 9Q7Q|1|5|U|4532, 9Q7Q|1|5|U|4555, 9Q7Q|1|5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9Q7Q|1|5|A|3903
9Q7Q|1|5|G|3904
9Q7Q|1|5|A|3905
9Q7Q|1|5|A|3906
9Q7Q|1|5|G|3907
9Q7Q|1|5|A|3908
9Q7Q|1|5|C|3909
9Q7Q|1|5|C|3910
*
9Q7Q|1|5|G|4392
9Q7Q|1|5|G|4393
9Q7Q|1|5|A|4394
9Q7Q|1|5|U|4395
9Q7Q|1|5|A|4396
9Q7Q|1|5|A|4397
9Q7Q|1|5|C|4398
9Q7Q|1|5|U|4399
9Q7Q|1|5|G|4400
*
9Q7Q|1|5|C|4444
9Q7Q|1|5|U|4445
9Q7Q|1|5|U|4446
9Q7Q|1|5|C|4447
9Q7Q|1|5|G|4448
9Q7Q|1|5|A|4449
9Q7Q|1|5|U|4450
9Q7Q|1|5|G|4451
9Q7Q|1|5|U|4452
9Q7Q|1|5|C|4453
*
9Q7Q|1|5|G|4528
9Q7Q|1|5|G|4529
9Q7Q|1|5|U|4530
9Q7Q|1|5|U|4531
9Q7Q|1|5|U|4532
9Q7Q|1|5|A|4533
9Q7Q|1|5|G|4534
*
9Q7Q|1|5|U|4552
9Q7Q|1|5|A|4553
9Q7Q|1|5|G|4554
9Q7Q|1|5|U|4555
9Q7Q|1|5|U|4556
9Q7Q|1|5|U|4557

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain 1: AMD1 C-tail
Chain 2: Transfer RNA; tRNA
Chain A: Ribosomal protein L8
Chain B: Ribosomal protein L3
Chain C: 60S ribosomal protein L4
Chain I: 60S ribosomal protein L10
Chain RF: Eukaryotic peptide chain release factor subunit 1
Chain a: 60S ribosomal protein L27a
Chain b: Large ribosomal subunit protein eL29

J5_9Q7Q_004