J5_9Q87_001

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q87|1|A|C|36
9Q87|1|A|U|37
9Q87|1|A|G|38
9Q87|1|A|G|39
*
9Q87|1|A|C|403
9Q87|1|A|G|404
9Q87|1|A|U|405
9Q87|1|A|G|406
*
9Q87|1|A|C|436
9Q87|1|A|U|437
9Q87|1|A|U|438
9Q87|1|A|U|439
9Q87|1|A|C|440
*
9Q87|1|A|G|497
9Q87|1|A|A|498
9Q87|1|A|A|499
9Q87|1|A|G|500
*
9Q87|1|A|C|545
9Q87|1|A|A|546
9Q87|1|A|A|547
9Q87|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12