J5_9Q87_004

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9Q87|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9Q87_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0594

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9Q87|1|a|C|47
9Q87|1|a|G|48
9Q87|1|a|A|49
9Q87|1|a|U|50
9Q87|1|a|G|51
9Q87|1|a|A|52
9Q87|1|a|A|53
9Q87|1|a|G|54
*
9Q87|1|a|C|116
9Q87|1|a|G|117
9Q87|1|a|A|118
9Q87|1|a|A|119
9Q87|1|a|U|120
9Q87|1|a|G|121
*
9Q87|1|a|C|130
9Q87|1|a|A|131
*
9Q87|1|a|U|148
9Q87|1|a|A|149
9Q87|1|a|U|150
*
9Q87|1|a|A|176
9Q87|1|a|G|177
9Q87|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23