J5_9Q87_008
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)(AP7)ACA*U(TKW)G(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 9Q87|1|a|A|2066, 9Q87|1|a|A|2452, 9Q87|1|a|H2U|2453, 9Q87|1|a|TKW|2505, 9Q87|1|a|U|2613
- QA status
- Modified nucleotides: H2U, AP7, TKW, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q87|1|a|G|2061
9Q87|1|a|A|2062
9Q87|1|a|A|2063
9Q87|1|a|A|2064
9Q87|1|a|G|2065
9Q87|1|a|A|2066
9Q87|1|a|C|2067
9Q87|1|a|C|2068
*
9Q87|1|a|G|2450
9Q87|1|a|G|2451
9Q87|1|a|A|2452
9Q87|1|a|H2U|2453
9Q87|1|a|AP7|2454
9Q87|1|a|A|2455
9Q87|1|a|C|2456
9Q87|1|a|A|2457
*
9Q87|1|a|U|2504
9Q87|1|a|TKW|2505
9Q87|1|a|G|2506
9Q87|1|a|2MA|2507
9Q87|1|a|PSU|2508
9Q87|1|a|G|2509
9Q87|1|a|U|2510
*
9Q87|1|a|G|2587
9Q87|1|a|U|2588
9Q87|1|a|U|2589
9Q87|1|a|U|2590
9Q87|1|a|A|2591
9Q87|1|a|G|2592
*
9Q87|1|a|C|2610
9Q87|1|a|G|2611
9Q87|1|a|G|2612
9Q87|1|a|U|2613
9Q87|1|a|C|2614
9Q87|1|a|C|2615
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- Large ribosomal subunit protein uL3
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: