J5_9QEH_001

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

9QEH|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9QEH_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0623

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9QEH|1|A|C|47
9QEH|1|A|G|48
9QEH|1|A|A|49
9QEH|1|A|U|50
9QEH|1|A|G|51
9QEH|1|A|A|52
9QEH|1|A|A|53
9QEH|1|A|G|54
*
9QEH|1|A|C|115
9QEH|1|A|G|116
9QEH|1|A|A|117
9QEH|1|A|A|118
9QEH|1|A|U|119
9QEH|1|A|G|120
*
9QEH|1|A|C|129
9QEH|1|A|A|130
*
9QEH|1|A|U|149
9QEH|1|A|A|150
9QEH|1|A|U|151
*
9QEH|1|A|A|178
9QEH|1|A|A|179
9QEH|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34