J5_9QEH_003
3D structure
- PDB id
- 9QEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9QEH|1|A|U|1293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9QEH_003 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.0635
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9QEH|1|A|C|627
9QEH|1|A|G|628
9QEH|1|A|A|629
9QEH|1|A|G|630
9QEH|1|A|U|631
9QEH|1|A|U|632
*
9QEH|1|A|A|713
9QEH|1|A|G|714
9QEH|1|A|A|715
9QEH|1|A|C|716
*
9QEH|1|A|G|854
9QEH|1|A|U|855
9QEH|1|A|U|856
9QEH|1|A|C|857
*
9QEH|1|A|G|1234
9QEH|1|A|C|1235
*
9QEH|1|A|G|1288
9QEH|1|A|A|1289
9QEH|1|A|G|1290
9QEH|1|A|A|1291
9QEH|1|A|A|1292
9QEH|1|A|U|1293
9QEH|1|A|G|1294
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL15
- Chain O
- Large ribosomal subunit protein bL20
- Chain P
- Large ribosomal subunit protein bL21
Coloring options: