J5_9QEH_005
3D structure
- PDB id
- 9QEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- G(MA6)AAGACC*GGA(H2U)AACA*UCG(2MA)UGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 9QEH|1|A|A|2089||A, 9QEH|1|A|A|2475, 9QEH|1|A|H2U|2476, 9QEH|1|A|U|2636
- QA status
- Modified nucleotides: MA6, H2U, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QEH|1|A|G|2084
9QEH|1|A|MA6|2085
9QEH|1|A|A|2086
9QEH|1|A|A|2087
9QEH|1|A|G|2088
9QEH|1|A|A|2089||A
9QEH|1|A|C|2090
9QEH|1|A|C|2091
*
9QEH|1|A|G|2473
9QEH|1|A|G|2474
9QEH|1|A|A|2475
9QEH|1|A|H2U|2476
9QEH|1|A|A|2477
9QEH|1|A|A|2478
9QEH|1|A|C|2479
9QEH|1|A|A|2480
*
9QEH|1|A|U|2527
9QEH|1|A|C|2528
9QEH|1|A|G|2529
9QEH|1|A|2MA|2530
9QEH|1|A|U|2531
9QEH|1|A|G|2532
9QEH|1|A|U|2533
*
9QEH|1|A|G|2610
9QEH|1|A|U|2611
9QEH|1|A|U|2612
9QEH|1|A|C|2613
9QEH|1|A|A|2614
9QEH|1|A|G|2615
*
9QEH|1|A|C|2633
9QEH|1|A|G|2634
9QEH|1|A|G|2635
9QEH|1|A|U|2636
9QEH|1|A|C|2637
9QEH|1|A|C|2638
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain C
- Large ribosomal subunit protein uL2
- Chain D
- Large ribosomal subunit protein uL3
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL15
- Chain K
- Large ribosomal subunit protein uL16
- Chain Z
- Large ribosomal subunit protein bL32
Coloring options: