J5_9QLO_003

3D structure

PDB id

9QLO (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QLO|1|L5|G|3620, 9QLO|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QLO|1|L5|G|2855
9QLO|1|L5|C|2856
9QLO|1|L5|A|2857
9QLO|1|L5|A|2858
9QLO|1|L5|G|2859
9QLO|1|L5|C|2860
9QLO|1|L5|C|2861
9QLO|1|L5|G|2862
9QLO|1|L5|G|2863
*
9QLO|1|L5|U|2887
9QLO|1|L5|G|2888
*
9QLO|1|L5|U|3613
9QLO|1|L5|G|3614
*
9QLO|1|L5|C|3618
9QLO|1|L5|G|3619
9QLO|1|L5|G|3620
9QLO|1|L5|A|3621
9QLO|1|L5|C|3622
9QLO|1|L5|C|3623
9QLO|1|L5|A|3624
9QLO|1|L5|G|3625
9QLO|1|L5|G|3626
*
9QLO|1|L5|C|3835
9QLO|1|L5|A|3836
9QLO|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA