J5_9QLP_003

3D structure

PDB id

9QLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - State 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QLP|1|L5|G|3620, 9QLP|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QLP|1|L5|G|2855
9QLP|1|L5|C|2856
9QLP|1|L5|A|2857
9QLP|1|L5|A|2858
9QLP|1|L5|G|2859
9QLP|1|L5|C|2860
9QLP|1|L5|C|2861
9QLP|1|L5|G|2862
9QLP|1|L5|G|2863
*
9QLP|1|L5|U|2887
9QLP|1|L5|G|2888
*
9QLP|1|L5|U|3613
9QLP|1|L5|G|3614
*
9QLP|1|L5|C|3618
9QLP|1|L5|G|3619
9QLP|1|L5|G|3620
9QLP|1|L5|A|3621
9QLP|1|L5|C|3622
9QLP|1|L5|C|3623
9QLP|1|L5|A|3624
9QLP|1|L5|G|3625
9QLP|1|L5|G|3626
*
9QLP|1|L5|C|3835
9QLP|1|L5|A|3836
9QLP|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA