J5_9QLQ_003

3D structure

PDB id

9QLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - alternative State

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QLQ|1|L5|G|3620, 9QLQ|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9QLQ_003 not in the Motif Atlas

Homologous match to J5_8GLP_003

Geometric discrepancy: 0.0351

The information below is about J5_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.4

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

12

Unit IDs

9QLQ|1|L5|G|2855
9QLQ|1|L5|C|2856
9QLQ|1|L5|A|2857
9QLQ|1|L5|A|2858
9QLQ|1|L5|G|2859
9QLQ|1|L5|C|2860
9QLQ|1|L5|C|2861
9QLQ|1|L5|G|2862
9QLQ|1|L5|G|2863
*
9QLQ|1|L5|U|2887
9QLQ|1|L5|G|2888
*
9QLQ|1|L5|U|3613
9QLQ|1|L5|G|3614
*
9QLQ|1|L5|C|3618
9QLQ|1|L5|G|3619
9QLQ|1|L5|G|3620
9QLQ|1|L5|A|3621
9QLQ|1|L5|C|3622
9QLQ|1|L5|C|3623
9QLQ|1|L5|A|3624
9QLQ|1|L5|G|3625
9QLQ|1|L5|G|3626
*
9QLQ|1|L5|C|3835
9QLQ|1|L5|A|3836
9QLQ|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA