J5_9QOH_003

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QOH|1|A2|G|3276, 9QOH|1|A2|G|3281

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QOH|1|A2|G|2610
9QOH|1|A2|C|2611
9QOH|1|A2|A|2612
9QOH|1|A2|A|2613
9QOH|1|A2|G|2614
9QOH|1|A2|C|2615
9QOH|1|A2|OMC|2616
9QOH|1|A2|G|2617
9QOH|1|A2|G|2618
*
9QOH|1|A2|U|2642
9QOH|1|A2|G|2643
*
9QOH|1|A2|U|3269
9QOH|1|A2|G|3270
*
9QOH|1|A2|C|3274
9QOH|1|A2|G|3275
9QOH|1|A2|G|3276
9QOH|1|A2|A|3277
9QOH|1|A2|C|3278
9QOH|1|A2|C|3279
9QOH|1|A2|A|3280
9QOH|1|A2|G|3281
9QOH|1|A2|G|3282
*
9QOH|1|A2|C|3491
9QOH|1|A2|A|3492
9QOH|1|A2|C|3493

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain L2

Large ribosomal subunit protein eL19

Chain P2

Large ribosomal subunit protein uL14

Chain Q2

Large ribosomal subunit protein eL24

Chain m2

Small subunit ribosomal RNA; SSU rRNA