J5_9QQP_003
3D structure
- PDB id
- 9QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-2 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9QQP|1|A2|G|3276, 9QQP|1|A2|G|3281
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QQP|1|A2|G|2610
9QQP|1|A2|C|2611
9QQP|1|A2|A|2612
9QQP|1|A2|A|2613
9QQP|1|A2|G|2614
9QQP|1|A2|C|2615
9QQP|1|A2|OMC|2616
9QQP|1|A2|G|2617
9QQP|1|A2|G|2618
*
9QQP|1|A2|U|2642
9QQP|1|A2|G|2643
*
9QQP|1|A2|U|3269
9QQP|1|A2|G|3270
*
9QQP|1|A2|C|3274
9QQP|1|A2|G|3275
9QQP|1|A2|G|3276
9QQP|1|A2|A|3277
9QQP|1|A2|C|3278
9QQP|1|A2|C|3279
9QQP|1|A2|A|3280
9QQP|1|A2|G|3281
9QQP|1|A2|G|3282
*
9QQP|1|A2|C|3491
9QQP|1|A2|A|3492
9QQP|1|A2|C|3493
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain E2
- Large ribosomal subunit protein uL3
- Chain L2
- Large ribosomal subunit protein eL19
- Chain P2
- Large ribosomal subunit protein uL14
- Chain Q2
- Large ribosomal subunit protein eL24
- Chain m2
- Small subunit ribosomal RNA; SSU rRNA
- Chain u2
- Small ribosomal subunit protein eS8
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