J5_9QQP_004
3D structure
- PDB id
- 9QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-2 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GA(PSU)GUC*GGU(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9QQP|1|A2|A|3564, 9QQP|1|A2|A|4046, 9QQP|1|A2|G|4103, 9QQP|1|A2|U|4104, 9QQP|1|A2|U|4207, 9QQP|1|A2|U|4208
- QA status
- Modified nucleotides: OMG, 5MC, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QQP|1|A2|A|3559
9QQP|1|A2|G|3560
9QQP|1|A2|A|3561
9QQP|1|A2|A|3562
9QQP|1|A2|G|3563
9QQP|1|A2|A|3564
9QQP|1|A2|C|3565
9QQP|1|A2|C|3566
*
9QQP|1|A2|OMG|4044
9QQP|1|A2|G|4045
9QQP|1|A2|A|4046
9QQP|1|A2|U|4047
9QQP|1|A2|A|4048
9QQP|1|A2|A|4049
9QQP|1|A2|C|4050
9QQP|1|A2|U|4051
9QQP|1|A2|G|4052
*
9QQP|1|A2|C|4096
9QQP|1|A2|U|4097
9QQP|1|A2|U|4098
9QQP|1|A2|5MC|4099
9QQP|1|A2|G|4100
9QQP|1|A2|A|4101
9QQP|1|A2|PSU|4102
9QQP|1|A2|G|4103
9QQP|1|A2|U|4104
9QQP|1|A2|C|4105
*
9QQP|1|A2|G|4180
9QQP|1|A2|G|4181
9QQP|1|A2|U|4182
9QQP|1|A2|PSU|4183
9QQP|1|A2|U|4184
9QQP|1|A2|A|4185
9QQP|1|A2|G|4186
*
9QQP|1|A2|U|4204
9QQP|1|A2|A|4205
9QQP|1|A2|G|4206
9QQP|1|A2|U|4207
9QQP|1|A2|U|4208
9QQP|1|A2|U|4209
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain By
- Nascent protein chain
- Chain D2
- Large ribosomal subunit protein uL2
- Chain E2
- Large ribosomal subunit protein uL3
- Chain F2
- Large ribosomal subunit protein uL4
- Chain J2
- Large ribosomal subunit protein uL22
- Chain V2
- Large ribosomal subunit protein eL29
Coloring options: