J5_9QQP_009
3D structure
- PDB id
- 9QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-2 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUCGCUCGACUUGGAUAAC*GCUAA(OMU)A(OMC)AUGCCGACGGG*UG*CCGAU*ACGACC
- Length
- 51 nucleotides
- Bulged bases
- 9QQP|1|m2|C|127, 9QQP|1|m2|C|142, 9QQP|1|m2|OMU|172
- QA status
- Modified nucleotides: OMU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QQP|1|m2|G|123
9QQP|1|m2|U|124
9QQP|1|m2|C|125
9QQP|1|m2|G|126
9QQP|1|m2|C|127
9QQP|1|m2|U|128
9QQP|1|m2|C|129
9QQP|1|m2|G|130
9QQP|1|m2|A|141
9QQP|1|m2|C|142
9QQP|1|m2|U|143
9QQP|1|m2|U|144
9QQP|1|m2|G|145
9QQP|1|m2|G|146
9QQP|1|m2|A|147
9QQP|1|m2|U|148
9QQP|1|m2|A|149
9QQP|1|m2|A|150
9QQP|1|m2|C|151
*
9QQP|1|m2|G|167
9QQP|1|m2|C|168
9QQP|1|m2|U|169
9QQP|1|m2|A|170
9QQP|1|m2|A|171
9QQP|1|m2|OMU|172
9QQP|1|m2|A|173
9QQP|1|m2|OMC|174
9QQP|1|m2|A|175
9QQP|1|m2|U|176
9QQP|1|m2|G|177
9QQP|1|m2|C|178
9QQP|1|m2|C|179
9QQP|1|m2|G|180
9QQP|1|m2|A|181
9QQP|1|m2|C|182
9QQP|1|m2|G|183
9QQP|1|m2|G|184
9QQP|1|m2|G|185
*
9QQP|1|m2|U|216
9QQP|1|m2|G|217
*
9QQP|1|m2|C|312
9QQP|1|m2|C|313
9QQP|1|m2|G|314
9QQP|1|m2|A|315
9QQP|1|m2|U|316
*
9QQP|1|m2|A|338
9QQP|1|m2|C|339
9QQP|1|m2|G|340
9QQP|1|m2|A|341
9QQP|1|m2|C|342
9QQP|1|m2|C|343
Current chains
- Chain m2
- 18S ribosomal RNA
Nearby chains
- Chain K3
- Small ribosomal subunit protein eS6
- Chain Q3
- Small ribosomal subunit protein eS24
- Chain r2
- 40S ribosomal protein S4, X isoform (eS4)
- Chain u2
- Small ribosomal subunit protein eS8
Coloring options: