J5_9R9P_009
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 9R9P|1|C2|U|639, 9R9P|1|C2|U|694, 9R9P|1|C2|C|696, 9R9P|1|C2|C|697, 9R9P|1|C2|U|742, 9R9P|1|C2|U|813, 9R9P|1|C2|G|815, 9R9P|1|C2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9P|1|C2|A|636
9R9P|1|C2|C|637
9R9P|1|C2|U|638
9R9P|1|C2|U|639
9R9P|1|C2|U|640
9R9P|1|C2|G|641
*
9R9P|1|C2|U|693
9R9P|1|C2|U|694
9R9P|1|C2|U|695
9R9P|1|C2|C|696
9R9P|1|C2|C|697
9R9P|1|C2|U|698
*
9R9P|1|C2|A|740
9R9P|1|C2|C|741
9R9P|1|C2|U|742
9R9P|1|C2|U|743
9R9P|1|C2|U|744
*
9R9P|1|C2|A|807
9R9P|1|C2|U|808
9R9P|1|C2|A|809
9R9P|1|C2|G|810
9R9P|1|C2|A|811
9R9P|1|C2|A|812
9R9P|1|C2|U|813
9R9P|1|C2|A|814
9R9P|1|C2|G|815
9R9P|1|C2|G|816
9R9P|1|C2|A|817
*
9R9P|1|C2|U|854
9R9P|1|C2|A|855
9R9P|1|C2|A|856
9R9P|1|C2|U|857
9R9P|1|C2|G|858
9R9P|1|C2|A|859
9R9P|1|C2|U|860
Current chains
- Chain C2
- RNA (1642-MER)
Nearby chains
- Chain LR
- 60S ribosomal protein L19-A
- Chain SH
- 40S ribosomal protein S7-A
- Chain SL
- 40S ribosomal protein S11-A
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
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