J5_9RJA_001

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RJA|1|A|C|36
9RJA|1|A|U|37
9RJA|1|A|G|38
9RJA|1|A|G|39
*
9RJA|1|A|C|403
9RJA|1|A|G|404
9RJA|1|A|U|405
9RJA|1|A|G|406
*
9RJA|1|A|C|436
9RJA|1|A|U|437
9RJA|1|A|U|438
9RJA|1|A|U|439
9RJA|1|A|C|440
*
9RJA|1|A|G|497
9RJA|1|A|A|498
9RJA|1|A|A|499
9RJA|1|A|G|500
*
9RJA|1|A|C|545
9RJA|1|A|A|546
9RJA|1|A|A|547
9RJA|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12