J5_9RPV_008

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9RPV|1|M5|G|3620, 9RPV|1|M5|G|3625

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9RPV_008 not in the Motif Atlas

Homologous match to J5_8GLP_003

Geometric discrepancy: 0.0421

The information below is about J5_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.4

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

12

Unit IDs

9RPV|1|M5|G|2855
9RPV|1|M5|C|2856
9RPV|1|M5|A|2857
9RPV|1|M5|A|2858
9RPV|1|M5|G|2859
9RPV|1|M5|C|2860
9RPV|1|M5|OMC|2861
9RPV|1|M5|G|2862
9RPV|1|M5|G|2863
*
9RPV|1|M5|U|2887
9RPV|1|M5|G|2888
*
9RPV|1|M5|U|3613
9RPV|1|M5|G|3614
*
9RPV|1|M5|C|3618
9RPV|1|M5|G|3619
9RPV|1|M5|G|3620
9RPV|1|M5|A|3621
9RPV|1|M5|C|3622
9RPV|1|M5|C|3623
9RPV|1|M5|A|3624
9RPV|1|M5|G|3625
9RPV|1|M5|G|3626
*
9RPV|1|M5|C|3835
9RPV|1|M5|A|3836
9RPV|1|M5|C|3837

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MR

60S ribosomal protein L19

Chain MV

60S ribosomal protein L23

Chain MW

60S ribosomal protein L24

Chain S3

Small subunit ribosomal RNA; SSU rRNA