J5_9RPV_009

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

9RPV|1|M5|A|3908, 9RPV|1|M5|A|4394, 9RPV|1|M5|G|4451, 9RPV|1|M5|U|4555, 9RPV|1|M5|U|4556

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|A|3903
9RPV|1|M5|G|3904
9RPV|1|M5|A|3905
9RPV|1|M5|A|3906
9RPV|1|M5|G|3907
9RPV|1|M5|A|3908
9RPV|1|M5|C|3909
9RPV|1|M5|C|3910
*
9RPV|1|M5|OMG|4392
9RPV|1|M5|G|4393
9RPV|1|M5|A|4394
9RPV|1|M5|U|4395
9RPV|1|M5|A|4396
9RPV|1|M5|A|4397
9RPV|1|M5|C|4398
9RPV|1|M5|U|4399
9RPV|1|M5|G|4400
*
9RPV|1|M5|C|4444
9RPV|1|M5|U|4445
9RPV|1|M5|U|4446
9RPV|1|M5|5MC|4447
9RPV|1|M5|G|4448
9RPV|1|M5|A|4449
9RPV|1|M5|U|4450
9RPV|1|M5|G|4451
9RPV|1|M5|U|4452
9RPV|1|M5|C|4453
*
9RPV|1|M5|G|4528
9RPV|1|M5|G|4529
9RPV|1|M5|UR3|4530
9RPV|1|M5|PSU|4531
9RPV|1|M5|PSU|4532
9RPV|1|M5|A|4533
9RPV|1|M5|G|4534
*
9RPV|1|M5|PSU|4552
9RPV|1|M5|A|4553
9RPV|1|M5|G|4554
9RPV|1|M5|U|4555
9RPV|1|M5|U|4556
9RPV|1|M5|U|4557

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain B5

Transfer RNA; tRNA

Chain MA

Large ribosomal subunit protein uL2

Chain MB

Large ribosomal subunit protein uL3

Chain MC

60S ribosomal protein L4

Chain Mb

Large ribosomal subunit protein eL29