J5_9RPV_013
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- AUCUUGG*CCCUUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 33 nucleotides
- Bulged bases
- 9RPV|1|S2|C|687, 9RPV|1|S2|U|743, 9RPV|1|S2|U|871, 9RPV|1|S2|G|873, 9RPV|1|S2|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RPV|1|S2|A|685
9RPV|1|S2|U|686
9RPV|1|S2|C|687
9RPV|1|S2|U|688
9RPV|1|S2|U|689
9RPV|1|S2|G|690
9RPV|1|S2|G|691
*
9RPV|1|S2|C|739
9RPV|1|S2|C|740
9RPV|1|S2|C|741
9RPV|1|S2|U|742
9RPV|1|S2|U|743
9RPV|1|S2|G|744
*
9RPV|1|S2|C|797
9RPV|1|S2|G|798
9RPV|1|S2|U|799
9RPV|1|S2|U|800
*
9RPV|1|S2|A|865
9RPV|1|S2|U|866
9RPV|1|S2|G|867
9RPV|1|S2|G|868
9RPV|1|S2|A|869
9RPV|1|S2|A|870
9RPV|1|S2|U|871
9RPV|1|S2|A|872
9RPV|1|S2|G|873
9RPV|1|S2|G|874
*
9RPV|1|S2|C|912
9RPV|1|S2|A|913
9RPV|1|S2|U|914
9RPV|1|S2|G|915
9RPV|1|S2|A|916
9RPV|1|S2|U|917
Current chains
- Chain S2
- 18S rRNA of the collided 80S
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: